曽 超 (Chao ZENG, Ph.D.)

Junior Researcher (Hamada Lab, Waseda University)

〒169-8555 新宿区大久保3-4-1 西早稲田キャンパス55号館N棟4階05B室

✎ chao.zeng{AT}aoni.waseda.jp

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News (archives)

Experience

Education

Grants (2)

Manuscripts in preparation

  1. Katsuhisa Takahashi, Chao Zeng, Michiaki Hamada*
  2. Chao Zeng, et al.
  3. Chao Zeng*, Atsushi Takeda, Kotaro Sekine, Naoki Osato, Tsukasa Fukunaga, Michiaki Hamada*, Bioinformatics Approaches for Determining the Functional Impact of Repetitive Elements on Non-coding RNAs, Methods in Molecular Biology (invited review, preprint)

Publications (Total 10・First author 5・*Corresponding 6)

  1. Yu Hamaguchi*, Chao Zeng, Michiaki Hamada*, Impact of human gene annotations on RNA-seq differential expression analysis, BMC Genomics, in press [preprint]
  2. Masahiro Onoguchi, Chao Zeng, Ayako Matsumaru, Michiaki Hamada*, Binding patterns of RNA binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements, NAR Genomics and Bioinformatics, 3(3):lqab055, 2021. doi: 10.1093/nargab/lqab055. (bioRxiv)
  3. Satoshi Takahashi, Rintaro Noro, Masahiro Seike*, Chao Zeng, Masaru Matsumoto, Akiko Yoshikawa, Shinji Nakamichi, Teppei Sugano, Mariko Hirao, Kuniko Matsuda, Michiaki Hamada, Akihiko Gemma, Long Non-Coding RNA CRNDE is Involved in Resistance to EGFR Tyrosine Kinase Inhibitor in EGFR-Mutant Lung Cancer via eIF4A3/MUC1/EGFR Signaling, International Journal of Molecular Sciences, 22(8):4005, 2021. doi: 10.3390/ijms22084005
  4. Chao Zeng*, Masahiro Onoguchi, Michiaki Hamada*, Association analysis of repetitive elements and R-loop formation across species, Mobile DNA, 12(3), 2021. doi: 10.1186/s13100-021-00231-5. [bioRxiv] [preLights]
  5. Chao Zeng, Michiaki Hamada*, Detection and characterization of ribosome-associated lncRNA, Methods in Molecular Biology, 2254:179-194, 2021. doi: 10.1007/978-1-0716-1158-6_11.
  6. Chao Zeng*, Michiaki Hamada*, RNA-seq analysis reveals localization-associated alternative splicing across 13 cell lines, Genes, 11(7):820, 2020. doi: 10.3390/genes11070820. [bioRxiv]
  7. Chao Zeng*, Michiaki Hamada*, Identifying sequence features that drive ribosomal association for lncRNA, BMC Genomics, 19(Suppl 10):906, 2018. doi: 10.1186/s12864-018-5275-8.
  8. Chao Zeng*, Tsukasa Fukunaga and Michiaki Hamada*, Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data, BMC Genomics, 19:414, 2018. doi: 10.1186/s12864-018-4765-z.
  9. Hu, Xiao-tong*, Chao Zeng*, Obstacle Avoidance and Path Planning Based on S-Type Double-Arc Insertion Method, 6th International Conference on Wireless Communications Networking and Mobile Computing (WiCOM), 2010. doi: 10.1109/WICOM.2010.5600668.
  10. 胡晓彤*, 曽超*, 靶向穿刺自动进针障碍物规避路径规划的研究, 图像图形技术研究与应用, 2010.

Presentations (2012~2021)

Awards (2)

Activities

Peer review experience

BMC Bioinformatics, Frontier in Genetics, Nature Methods