曽 超 (Chao ZENG, Ph.D.)

Junior Researcher (Hamada Lab, Waseda University)

〒162-0041 東京都新宿区早稲田鶴巻町513 番地 早稲田大学121号館501室

✎ chao.zeng{AT}aoni.waseda.jp

▷ORCiD ▷ResearchGate ▷Google Scholar ▷Researchmap

News (archives)

• 2024/07/02: Co-authored paper on AZIN1 A-to-I editing in kidney is now available online in J Clin Invest.

• 2024/06/26: 第24回日本RNA学会年会でポスター発表を行います。

• 2024/05/31: RNA2024でポスター発表を行います。

• 2024/04/12: Co-authored paper on TISPL RNA induced by ER stress is now available online in Gene.

• 2024/04/01: NGS EXPO 2024 (9/4~5)で招待講演を行います。

• 2024/02/02: 早稲田大学の『西北の風』年刊に、難溶性RNA研究の記事が掲載されました。

Experience

• 2021/04/01~present: Waseda University, Junior Researcher

• 2018/11/01~2021/03/31: CBBD-OIL (AIST), Postdoctoral Researcher

• 2018/05/01~2018/10/31: Waseda University, Research Associate

• 2016/12/01~2018/04/30: CBBD-OIL (AIST), Technical Staff

• 2016/04/01~2016/11/31: The University of Tokyo, Project Researcher

Education

• PhD in Science, The University of Tokyo, 2013~2016

• MSc in Informatics, Kyoto University, 2010~2013

• BSc in Information Processing, Tianjin University of Science & Technology, 2006~2010

Grants (4)

• 2023/04~2026/03: Grant-in-Aid for Scientific Research A (Co-Investigator) / 基盤研究A・分担 (23H00509)

• 2022/04~2025/03: Grant-in-Aid for Early-Career Scientists (PI) / 若手研究・代表 (22K15093)

• 2021/07~2023/03: Grant-in-Aid for Challenging Exploratory Research (Co-Investigator) / 挑戦的萌芽研究・分担 (21K19402)

• 2020/04~2022/03: Grant-in-Aid for Early-Career Scientists (PI) / 若手研究・代表 (20K15784)

Manuscripts in preparation

1. XXX, ... Chao Zeng, ..., XXX (in preparation)

2. Kenzui Taniue*, Anzu Sugawara, Chao Zeng, Han Han, Xinyue Gao, Yuki Shimoura, Atsuko Ozeki, Rena Mizutani, Masahide Seki, Yutaka Suzuki, Michiaki Hamada, Nobuyoshi Akimitsu*, The MTR4/hnRNPK complex surveils aberrant polyadenylated RNAs with multiple exons, Nature Communications, 2024 (accepted)

3. XXX, Chao Zeng, Michiaki Hamada* (in preparation)

Publications (Total 13・First author 7・*Corresponding 6)

1. Segewkal Heruye, Jered Myslinski, Chao Zeng, Amy Zollman, Shinichi Makino, Azuma Nanamatsu, Quoseena Mir, Sarath Chandra Janga, Emma H Doud, Michael T Eadon, Bernhard Maier, Michiaki Hamada, Tuan M Tran, Pierre Dagher, Takashi Hato*, Inflammation primes the kidney for recovery by activating AZIN1 A-to-I editing, The Journal of Clinical Investigation, in press, 2024. doi: doi.org/10.1172/JCI180117

2. Yutaro Wakabayashi, Aika Shimono, Yuki Terauchi, Chao Zeng, Michiaki Hamada, Kentaro Semba, Shinya Watanabe, Kosuke Ishikawa*, Identification of a Novel Noncoding RNA Transcript TISPL Upregulated by Stressors that Stimulate ATF4, Gene, 917:148464, 2024. doi: 10.1016/j.gene.2024.148464

3. Chao Zeng, Takeshi Chujo, Tetsuro Hirose*, Michiaki Hamada*, Landscape of semi-extractable RNAs across five human cell lines, Nucleic Acids Research, 51(15):7820-7831, 2023. doi: 10.1093/nar/gkad567 ( JP | EN press release)

4. Chao Zeng*, Atsushi Takeda, Kotaro Sekine, Naoki Osato, Tsukasa Fukunaga, Michiaki Hamada*, Bioinformatics Approaches for Determining the Functional Impact of Repetitive Elements on Non-coding RNAs, Methods in Molecular Biology, 2509:315-340, 2022. doi: 10.1007/978-1-0716-2380-0_19

5. Yu Hamaguchi*, Chao Zeng, Michiaki Hamada*, Impact of human gene annotations on RNA-seq differential expression analysis, BMC Genomics, 22:730, 2021. doi: 10.1186/s12864-021-08038-7

6. Masahiro Onoguchi, Chao Zeng, Ayako Matsumaru, Michiaki Hamada*, Binding patterns of RNA binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements, NAR Genomics and Bioinformatics, 3(3):lqab055, 2021. doi: 10.1093/nargab/lqab055

7. Satoshi Takahashi, Rintaro Noro, Masahiro Seike*, Chao Zeng, Masaru Matsumoto, Akiko Yoshikawa, Shinji Nakamichi, Teppei Sugano, Mariko Hirao, Kuniko Matsuda, Michiaki Hamada, Akihiko Gemma, Long Non-Coding RNA CRNDE is Involved in Resistance to EGFR Tyrosine Kinase Inhibitor in EGFR-Mutant Lung Cancer via eIF4A3/MUC1/EGFR Signaling, International Journal of Molecular Sciences, 22(8):4005, 2021. doi: 10.3390/ijms22084005

8. Chao Zeng*, Masahiro Onoguchi, Michiaki Hamada*, Association analysis of repetitive elements and R-loop formation across species, Mobile DNA, 12(3), 2021. doi: 10.1186/s13100-021-00231-5 (preLights)

9. Chao Zeng, Michiaki Hamada*, Detection and characterization of ribosome-associated lncRNA, Methods in Molecular Biology, 2254:179-194, 2021. doi: 10.1007/978-1-0716-1158-6_11

10. Chao Zeng*, Michiaki Hamada*, RNA-seq analysis reveals localization-associated alternative splicing across 13 cell lines, Genes, 11(7):820, 2020. doi: 10.3390/genes11070820

11. Chao Zeng*, Michiaki Hamada*, Identifying sequence features that drive ribosomal association for lncRNA, BMC Genomics, 19(Suppl 10):906, 2018. doi: 10.1186/s12864-018-5275-8

12. Chao Zeng*, Tsukasa Fukunaga and Michiaki Hamada*, Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data, BMC Genomics, 19:414, 2018. doi: 10.1186/s12864-018-4765-z

13. Hu, Xiao-tong*, Chao Zeng*, Obstacle Avoidance and Path Planning Based on S-Type Double-Arc Insertion Method, 6th International Conference on Wireless Communications Networking and Mobile Computing (WiCOM), 2010. doi: 10.1109/WICOM.2010.5600668

Presentations (2012~Current)

Awards (3)

• 2023: 早稲田大学ティーチングアワード (2022年度秋学期)

• 2017: 生命医薬情報学連合大会研究奨励賞

• 2008: National Scholarship by Ministry of Education of the People's Republic of China

Activities

• GIW/ISCB Asia 2022(program committee)

• IIBMP2021 (chairman of the local organizing committee)

• Frontier in Genetics (reviewer editor in RNA section, 2021/3 ~ present)

Peer review experience

BMC Bioinformatics, Frontier in Genetics, Nature Methods, GIW/ISCB Asia 2022

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