曽 超 (Chao ZENG, Ph.D.)
Junior Researcher (Hamada Lab, Waseda University)
〒162-0041 東京都新宿区早稲田鶴巻町513 番地 早稲田大学121号館501室
✎ chao.zeng{AT}aoni.waseda.jp
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Experience
- 2021/04/01~present: Waseda University, Junior Researcher
- 2018/11/01~2021/03/31: CBBD-OIL (AIST), Postdoctoral Researcher
- 2018/05/01~2018/10/31: Waseda University, Research Associate
- 2016/12/01~2018/04/30: CBBD-OIL (AIST), Technical Staff
- 2016/04/01~2016/11/31: The University of Tokyo, Project Researcher
Education
- PhD in Science, The University of Tokyo, 2013~2016
- MSc in Informatics, Kyoto University, 2010~2013
- BSc in Information Processing, Tianjin University of Science & Technology, 2006~2010
Grants (3)
- 2022/04~2025/03: Grant-in-Aid for Early-Career Scientists / 若手研究・代表 (22K15093)
- 2021/07~2023/03: Grant-in-Aid for Challenging Exploratory Research (Co-Investigator) / 挑戦的萌芽研究・分担 (21K19402)
- 2020/04~2022/03: Grant-in-Aid for Early-Career Scientists / 若手研究 (20K15784)
Manuscripts in preparation
- XX, Chao Zeng, et al.
- Katsuhisa Takahashi, Chao Zeng, Michiaki Hamada*
- Chao Zeng, Takeshi Chujo, Tetsuro Hirose*, Michiaki Hamada*, Landscape of semi-extractable RNAs across five human cell lines, 2022 (bioRxiv)
Publications (Total 11・First author 6・*Corresponding 7)
- Chao Zeng*, Atsushi Takeda, Kotaro Sekine, Naoki Osato, Tsukasa Fukunaga, Michiaki Hamada*, Bioinformatics Approaches for Determining the Functional Impact of Repetitive Elements on Non-coding RNAs, Methods in Molecular Biology, 2509:315-340, 2022. doi: 10.1007/978-1-0716-2380-0_19 (preprint)
- Yu Hamaguchi*, Chao Zeng, Michiaki Hamada*, Impact of human gene annotations on RNA-seq differential expression analysis, BMC Genomics, 22:730, 2021. doi: 10.1186/s12864-021-08038-7 [preprint]
- Masahiro Onoguchi, Chao Zeng, Ayako Matsumaru, Michiaki Hamada*, Binding patterns of RNA binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements, NAR Genomics and Bioinformatics, 3(3):lqab055, 2021. doi: 10.1093/nargab/lqab055 (bioRxiv)
- Satoshi Takahashi, Rintaro Noro, Masahiro Seike*, Chao Zeng, Masaru Matsumoto, Akiko Yoshikawa, Shinji Nakamichi, Teppei Sugano, Mariko Hirao, Kuniko Matsuda, Michiaki Hamada, Akihiko Gemma, Long Non-Coding RNA CRNDE is Involved in Resistance to EGFR Tyrosine Kinase Inhibitor in EGFR-Mutant Lung Cancer via eIF4A3/MUC1/EGFR Signaling, International Journal of Molecular Sciences, 22(8):4005, 2021. doi: 10.3390/ijms22084005
- Chao Zeng*, Masahiro Onoguchi, Michiaki Hamada*, Association analysis of repetitive elements and R-loop formation across species, Mobile DNA, 12(3), 2021. doi: 10.1186/s13100-021-00231-5 [bioRxiv] [preLights]
- Chao Zeng, Michiaki Hamada*, Detection and characterization of ribosome-associated lncRNA, Methods in Molecular Biology, 2254:179-194, 2021. doi: 10.1007/978-1-0716-1158-6_11
- Chao Zeng*, Michiaki Hamada*, RNA-seq analysis reveals localization-associated alternative splicing across 13 cell lines, Genes, 11(7):820, 2020. doi: 10.3390/genes11070820 [bioRxiv]
- Chao Zeng*, Michiaki Hamada*, Identifying sequence features that drive ribosomal association for lncRNA, BMC Genomics, 19(Suppl 10):906, 2018. doi: 10.1186/s12864-018-5275-8
- Chao Zeng*, Tsukasa Fukunaga and Michiaki Hamada*, Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data, BMC Genomics, 19:414, 2018. doi: 10.1186/s12864-018-4765-z
- Hu, Xiao-tong*, Chao Zeng*, Obstacle Avoidance and Path Planning Based on S-Type Double-Arc Insertion Method, 6th International Conference on Wireless Communications Networking and Mobile Computing (WiCOM), 2010. doi: 10.1109/WICOM.2010.5600668
- 胡晓彤*, 曽超*, 靶向穿刺自动进针障碍物规避路径规划的研究, 图像图形技术研究与应用, 2010.
Awards (2)
Activities
Peer review experience
BMC Bioinformatics, Frontier in Genetics, Nature Methods, GIW/ISCB Asia 2022